STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114438935YTH domain-containing family protein 1-like. (629 aa)    
Predicted Functional Partners:
ZFC3H1
Zinc finger C3H1-type containing.
    
 0.902
papolg
poly(A) polymerase gamma.
   
 0.749
rbm26
RNA binding motif protein 26.
   
 0.696
rbm27
RNA binding motif protein 27.
   
 0.696
cnot8
CCR4-NOT transcription complex subunit 8.
    
 
 0.631
mettl14
Methyltransferase like 14.
  
   
 0.631
LOC114442473
CCR4-NOT transcription complex subunit 7.
    
 
 0.631
pcf11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.622
LOC114430073
CCR4-NOT transcription complex subunit 9.
    
  0.615
CNOT9
CCR4-NOT transcription complex subunit 9.
    
  0.615
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.