STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114438581Tumor protein D54-like. (202 aa)    
Predicted Functional Partners:
tpd52
Tumor protein D52.
    
  
0.681
snapin
SNAP associated protein.
   
 
  0.629
gabpb2
GA binding protein transcription factor subunit beta 2.
    
  0.617
tpd52l1
TPD52 like 1.
  
 
 
0.571
snx6
Sorting nexin 6.
   
 
  0.560
snx5
Sorting nexin 5.
   
 
  0.560
vamp7
Vesicle associated membrane protein 7.
     
 0.533
ENSPRNP00000028794
Vesicle-associated membrane protein 1.
     
 0.533
mal2
Mal, T cell differentiation protein 2.
   
 
 0.449
LOC114443015
Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2B-like.
    
  0.445
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.