STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim33Tripartite motif containing 33. (1197 aa)    
Predicted Functional Partners:
LOC114443412
Mothers against decapentaplegic homolog 4-like.
   
 0.778
LOC114441285
Mothers against decapentaplegic homolog 4-like.
   
 0.778
smarcad1
annotation not available
   
 
 0.770
LOC114431469
Mothers against decapentaplegic homolog 4-like.
   
 0.749
LOC114448233
Mothers against decapentaplegic homolog 4-like.
   
 0.749
rps27a
Ribosomal protein S27a.
    
  0.732
LOC114443438
Mothers against decapentaplegic homolog 2-like.
    
 0.724
LOC114451915
Mothers against decapentaplegic homolog 3-like.
    
 0.724
LOC114440808
Mothers against decapentaplegic homolog 2.
    
 0.724
SMAD3
Mothers against decapentaplegic homolog 3.
    
 0.724
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.