STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPRNP00000001524annotation not available (1275 aa)    
Predicted Functional Partners:
SENP6
SUMO specific peptidase 6.
   
   0.762
LOC114443577
nipped-B-like protein.
   
  0.733
nipbl
NIPBL cohesin loading factor.
   
  0.733
tpr
Translocated promoter region, nuclear basket protein.
   
 0.730
mysm1
Myb like, SWIRM and MPN domains 1.
   
 0.725
LOC114445808
U2 snRNP-associated SURP motif-containing protein-like.
   
    0.717
u2surp
U2 snRNP associated SURP domain containing.
   
    0.717
ENSPRNP00000027756
Translocase of outer mitochondrial membrane 20.
   
 0.705
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.676
ENSPRNP00000051160
Leucine-rich repeats and guanylate kinase domain containing.
    
 0.661
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.