STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ca6Carbonic anhydrase 6. (540 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.700
rrs1
Ribosome biogenesis regulator 1 homolog.
   
 
 0.639
rpl11
Ribosomal protein L11.
    
 
 0.616
RPL5
Ribosomal protein L5.
    
 
 0.585
RPL5-2
60S ribosomal protein L5-like.
    
 
 0.585
grwd1
Glutamate rich WD repeat containing 1.
   
  
 0.540
ivd
isovaleryl-CoA dehydrogenase.
    
  0.531
LOC114430301
Long-chain specific acyl-CoA dehydrogenase, mitochondrial-like.
    
  0.531
c24h6orf58
Chromosome 24 C6orf58 homolog.
   
  
 0.528
slc26a5
Solute carrier family 26 member 5.
  
 
 0.525
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.