STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam20bFAM20B glycosaminoglycan xylosylkinase. (409 aa)    
Predicted Functional Partners:
LOC114437300
Extracellular serine/threonine protein kinase FAM20C-like.
    
0.839
LOC114440495
Extracellular serine/threonine protein kinase FAM20C-like.
    
0.839
LOC114440494
Extracellular serine/threonine protein kinase FAM20C-like.
    
0.839
GGT7
Glutathione hydrolase 7-like.
     
 0.648
qsox1
Quiescin sulfhydryl oxidase 1.
     
 0.643
sparc
Secreted protein acidic and cysteine rich.
     
 0.635
kyat3
Kynurenine aminotransferase 3.
     
 0.635
mbtps1
Membrane bound transcription factor peptidase, site 1.
     
 0.608
rps27a
Ribosomal protein S27a.
    
  0.587
LOC114443752
Glutathione hydrolase 5 proenzyme-like.
     
 0.582
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.