STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114451485Telomerase reverse transcriptase-like. (1090 aa)    
Predicted Functional Partners:
pot1
Protection of telomeres 1.
    
 0.982
LOC114452153
Uncharacterized LOC114452153.
    
 0.976
ENSPRNP00000056581
annotation not available
    
 0.973
smg6
SMG6 nonsense mediated mRNA decay factor.
   
 0.969
smg7
SMG7 nonsense mediated mRNA decay factor.
   
 0.963
smg5
SMG5 nonsense mediated mRNA decay factor.
   
 0.963
wrap53
WD repeat containing antisense to TP53.
    
 0.929
ctnnb1
Catenin beta 1.
    
 0.927
nhp2
NHP2 ribonucleoprotein.
    
 0.924
nop10
NOP10 ribonucleoprotein.
     
 0.916
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.