STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudcd1NudC domain containing 1. (587 aa)    
Predicted Functional Partners:
copa
Coatomer protein complex subunit alpha.
    
   0.702
DHX15
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
    
   0.671
LOC114451012
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like.
    
   0.671
copb1
Coatomer protein complex subunit beta 1.
   
   0.652
copg2
Coatomer protein complex subunit gamma 2.
    
   0.628
arcn1
Archain 1.
   
   0.623
LOC114447091
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32.
    
   0.578
ENSPRNP00000047268
annotation not available
    
   0.578
dhx32
DEAH-box helicase 32 (putative).
    
   0.578
LOC114443544
ATP-dependent RNA helicase DQX1-like.
    
   0.578
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.