STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtrafRNA transcription, translation and transport factor. (242 aa)    
Predicted Functional Partners:
ddx1
DEAD-box helicase 1.
   
 0.997
fam98a
Family with sequence similarity 98 member A.
    
 0.995
rtcb
RNA 2',3'-cyclic phosphate and 5'-OH ligase.
   
 0.994
fam98b
Family with sequence similarity 98 member B.
    
 0.992
c21h2orf49
Chromosome 21 C2orf49 homolog.
    
 0.988
LOC114444340
Protein FAM98B-like.
    
 0.980
zbtb8os
Zinc finger and BTB domain containing 8 opposite strand.
     
 0.935
LOC114451384
Proton myo-inositol cotransporter-like.
    
 0.704
LOC114439370
Solute carrier family 2, facilitated glucose transporter member 6-like.
    
 0.704
asah1
N-acylsphingosine amidohydrolase 1.
    
 0.704
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.