STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIB2Calcium and integrin-binding family member 2-like. (187 aa)    
Predicted Functional Partners:
tmc3
Transmembrane channel like 3.
    
 0.893
TMC1
Transmembrane channel-like protein 1.
    
 0.893
LOC114447795
Peripheral plasma membrane protein CASK-like.
    
 0.827
CASK
Calcium/calmodulin dependent serine protein kinase.
    
 0.827
myo3b
Myosin IIIB.
    
 0.724
ENSPRNP00000044580
annotation not available
    
 0.724
ENSPRNP00000044586
annotation not available
    
 0.724
ENSPRNP00000044587
annotation not available
    
 0.724
nudt12
Nudix hydrolase 12.
    
  0.671
xpc
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.645
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.