STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpatch1G-patch domain containing 1. (937 aa)    
Predicted Functional Partners:
wdr83
WD repeat domain 83.
    
 
 0.951
ccdc12
Coiled-coil domain containing 12.
    
 0.947
syf2
SYF2 pre-mRNA splicing factor.
    
  0.934
plrg1
Pleiotropic regulator 1.
    
 
 0.916
yju2
YJU2 splicing factor homolog.
    
  0.904
LOC114428137
SH2 domain-containing adapter protein F-like.
    
  0.879
cdc40
Cell division cycle 40.
    
  0.877
prpf19
pre-mRNA processing factor 19.
    
 
 0.874
srrm1
Serine and arginine repetitive matrix 1.
     
 0.869
mtrex
Mtr4 exosome RNA helicase.
   
 0.854
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.