STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114440267WD repeat domain phosphoinositide-interacting protein 1-like. (456 aa)    
Predicted Functional Partners:
atg2a
Autophagy related 2A.
    
 0.964
ATG2B
Autophagy related 2B.
    
 0.964
atg16l1
Autophagy related 16 like 1.
   
 0.953
LOC114445281
Autophagy-related protein 16-2-like.
   
 0.953
atg5
Autophagy related 5.
    
 0.935
atg12
Autophagy related 12.
    
 0.935
ENSPRNP00000051100
annotation not available
    
 0.933
atg9a
Autophagy related 9A.
   
 0.919
LOC114449317
Autophagy-related protein 9A-like.
   
 0.919
becn1
Beclin 1.
    
 0.885
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.