STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114437361Very long-chain acyl-CoA synthetase-like. (618 aa)    
Predicted Functional Partners:
bbs1
Bardet-Biedl syndrome 1.
   
 0.910
bbs9
Bardet-Biedl syndrome 9.
   
 0.909
bbs7
Bardet-Biedl syndrome 7.
   
 0.908
bbs4
Bardet-Biedl syndrome 4.
   
 0.900
ttc8
Tetratricopeptide repeat domain 8.
   
 0.895
scp2
Sterol carrier protein 2.
   
 
 0.869
LOC114434034
Non-specific lipid-transfer protein-like.
   
 
 0.869
slc27a2
Solute carrier family 27 member 2.
  
  
 
0.838
bbip1
BBSome interacting protein 1.
    
 0.834
LOC114437247
Very long-chain acyl-CoA synthetase-like.
  
  
 
0.827
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.