Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
tmem115Transmembrane protein 115. (382 aa)    
Predicted Functional Partners:
mul1
Mitochondrial E3 ubiquitin protein ligase 1.
   
    0.832
ubl7
Ubiquitin like 7.
      
 0.753
rabif
RAB interacting factor.
    
   0.734
ccdc25
Coiled-coil domain containing 25.
      
 0.728
tmem184a
Transmembrane protein 184A.
      
 0.727
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
      
 0.714
tmem135
Transmembrane protein 135.
      
 0.712
cog2
Component of oligomeric golgi complex 2.
   
 
  0.696
copb1
Coatomer protein complex subunit beta 1.
   
 
  0.692
cog4
Component of oligomeric golgi complex 4.
     
 0.672
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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