STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apaf1Apoptotic peptidase activating factor 1. (1256 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.998
casp9
Caspase 9.
    
0.998
LOC114447132
Cytochrome c.
   
 0.998
LOC114451022
Cytochrome c-a.
   
 0.998
LOC114426148
Cytochrome c.
   
 0.998
npvf
Neuropeptide VF precursor.
   
 0.996
birc6
Baculoviral IAP repeat containing 6.
   
 0.993
apip
APAF1 interacting protein.
    
 0.991
aven
Apoptosis and caspase activation inhibitor.
    
 0.991
ndufv2
NADH:ubiquinone oxidoreductase core subunit V2.
   
  0.966
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.