STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rogdiRogdi atypical leucine zipper. (303 aa)    
Predicted Functional Partners:
dmxl2
Dmx like 2.
    
 0.990
DMXL1
Dmx like 1.
    
 0.990
skp1
S-phase kinase associated protein 1.
    
 0.985
ATP6V1B2
V-type proton ATPase subunit B, brain isoform-like.
   
 
 0.783
LOC114447228
V-type proton ATPase subunit B, brain isoform.
   
 
 0.783
LOC114432588
V-type proton ATPase subunit E 1-like.
    
 
 0.774
LOC114437499
V-type proton ATPase subunit E 1-like.
    
 
 0.774
atp6v1h
ATPase H+ transporting V1 subunit H.
    
 
 0.737
WDR7
WD repeat domain 7.
    
 
 0.699
znhit1
Zinc finger HIT-type containing 1.
      
 0.539
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.