STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114434234FYVE and coiled-coil domain-containing protein 1-like. (1514 aa)    
Predicted Functional Partners:
LOC114436252
Ras-related protein rab7.
    
 0.901
LOC114436087
Ras-related protein rab7-like.
    
 0.901
LOC114449427
FYVE and coiled-coil domain-containing protein 1-like.
  
  
 
0.839
map1lc3a
Microtubule associated protein 1 light chain 3 alpha.
   
 
 0.774
map1lc3b
Microtubule associated protein 1 light chain 3 beta.
   
 
 0.774
armc5
Armadillo repeat containing 5.
     
 0.712
SMDT1
Single-pass membrane protein with aspartate rich tail 1.
     
 0.646
LOC114445329
Ras-related protein Rab-4B.
    
 0.634
rab4a
RAB4A, member RAS oncogene family.
    
 0.634
micu2
Mitochondrial calcium uptake 2.
   
 0.620
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.