STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114434248Uncharacterized LOC114434248. (607 aa)    
Predicted Functional Partners:
cdc73
Cell division cycle 73.
   
 0.848
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.840
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.836
aurka
Aurora kinase A.
    
 0.803
LOC114442548
Aurora kinase B-like.
    
 0.803
cinp
Cyclin dependent kinase 2 interacting protein.
    
 0.788
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
 0.788
supt6h
SPT6 homolog, histone chaperone and transcription elongation factor.
    
 0.735
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 0.732
ssrp1
Structure specific recognition protein 1.
    
 0.726
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.