STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paxxPAXX non-homologous end joining factor. (192 aa)    
Predicted Functional Partners:
xrcc6
X-ray repair cross complementing 6.
    
 0.973
xrcc5
X-ray repair cross complementing 5.
    
 0.972
lig4
DNA ligase 4.
    
 0.966
LOC114443504
DNA repair protein XRCC4-like.
     
 0.959
xrcc4
X-ray repair cross complementing 4.
    
 0.954
nhej1
Non-homologous end joining factor 1.
    
 0.950
tp53bp1
Tumor protein p53 binding protein 1.
     
 0.933
dclre1c
DNA cross-link repair 1C.
     
 0.926
ercc1
ERCC excision repair 1, endonuclease non-catalytic subunit.
   
 
 0.922
msh2
mutS homolog 2.
     
 0.922
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.