STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pes1Pescadillo ribosomal biogenesis factor 1. (586 aa)    
Predicted Functional Partners:
wdr12
WD repeat domain 12.
   
 0.999
cep152
Centrosomal protein 152.
   
 0.999
mak16
MAK16 homolog.
   
  0.999
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 0.999
brix1
Biogenesis of ribosomes BRX1.
   
 0.999
noc3l
NOC3 like DNA replication regulator.
   
 0.999
ddx27
DEAD-box helicase 27.
   
 0.999
cebpz
CCAAT enhancer binding protein zeta.
   
 0.999
LOC114444907
WD repeat-containing protein 74-like.
   
 0.999
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
 0.999
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.