STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ufd1Ubiquitin recognition factor in ER associated degradation 1. (310 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.999
faf1
Fas associated factor 1.
    
 0.998
faf2
Fas associated factor family member 2.
    
 0.998
derl1
Derlin 1.
   
 0.996
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 0.993
faap100
FA core complex associated protein 100.
   
 0.993
vcp
Valosin containing protein.
    
 0.992
ndufb7
Transitional endoplasmic reticulum ATPase-like.
    
 0.992
LOC114441077
Derlin-2-like.
   
 0.989
derl2
Derlin 2.
   
 0.989
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.