STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem167aTransmembrane protein 167A. (73 aa)    
Predicted Functional Partners:
LOC114434157
Ribonuclease P protein subunit p21-like.
   
 
  0.846
rpp30
Ribonuclease P/MRP subunit p30.
   
 
 0.843
c19h15orf40
Chromosome 19 C15orf40 homolog.
   
 
  0.823
nop10
NOP10 ribonucleoprotein.
   
 
  0.818
taf11
TATA-box binding protein associated factor 11.
   
 
  0.778
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
  0.736
ENSPRNP00000016683
Ribonuclease P/MRP 25 subunit-like.
   
 
 0.713
ENSPRNP00000021101
annotation not available
   
 
 0.713
RPP25
Ribonuclease P protein subunit p25-like protein.
   
 
 0.713
LOC114443899
Immediate early response 3-interacting protein 1.
   
   0.671
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.