STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhx37DEAH-box helicase 37. (1160 aa)    
Predicted Functional Partners:
LOC114426072
U3 small nucleolar RNA-associated protein 14 homolog A-like.
   
 0.976
ddx49
DEAD-box helicase 49.
  
 0.967
utp3
UTP3 small subunit processome component.
   
 0.963
wdr46
WD repeat domain 46.
   
 0.957
bysl
Bystin like.
   
 0.957
LOC114452526
Ribosome biogenesis protein BMS1 homolog.
   
 0.950
noc4l
Nucleolar complex associated 4 homolog.
   
 0.949
utp25
UTP25 small subunit processor component.
   
 0.949
nop14
NOP14 nucleolar protein.
   
 0.947
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.941
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.