STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF38E3 ubiquitin-protein ligase RNF38-like. (639 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.904
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.898
LOC114442537
Ubiquitin-conjugating enzyme E2 K.
    
 0.750
ube2k
Ubiquitin conjugating enzyme E2 K.
    
 0.750
smad7
SMAD family member 7.
   
 0.668
smad6
SMAD family member 6.
   
 0.668
LOC114433877
Mothers against decapentaplegic homolog 6-like.
   
 0.668
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.658
ube2n
Ubiquitin conjugating enzyme E2 N.
   
 0.649
LOC114430264
Ubiquitin-conjugating enzyme E2 N-like.
   
 0.649
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.