STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gm2aGM2 ganglioside activator. (194 aa)    
Predicted Functional Partners:
hexa
Hexosaminidase subunit alpha.
    
 0.774
hexb
Hexosaminidase subunit beta.
    
 0.774
fam149b1
Family with sequence similarity 149 member B1.
    
 0.749
sptlc1
Serine palmitoyltransferase long chain base subunit 1.
   
  
 0.537
etfa
Electron transfer flavoprotein subunit alpha.
      
 0.535
LOC114428432
5'-nucleotidase-like.
     
 0.527
NT5E
5'-nucleotidase ecto.
     
 0.527
tk1
Thymidine kinase 1.
     
 0.519
galns
Galactosamine (N-acetyl)-6-sulfatase.
      
 0.513
sirt4
Sirtuin 4.
    
  0.502
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.