STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c6h12orf4Chromosome 6 C12orf4 homolog. (578 aa)    
Predicted Functional Partners:
LOC114451109
Structure-specific endonuclease subunit slx1-like.
   
    0.782
LOC114429776
Exocyst complex component 8-like.
   
    0.779
ppp1r21
Protein phosphatase 1 regulatory subunit 21.
    
 
 0.745
tbck
TBC1 domain containing kinase.
    
 
 0.719
zhx2
Zinc fingers and homeoboxes 2.
    
 
 0.593
LOC114448720
Interleukin-6 receptor subunit alpha-like.
    
   0.581
znf330
Zinc finger protein 330.
      
 0.510
tmem184c
Transmembrane protein 184C.
   
    0.455
pelo
Pelota mRNA surveillance and ribosome rescue factor.
   
    0.426
LOC114448578
GON-4-like protein.
   
    0.426
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.