STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114441556Protein DGCR6-like. (191 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
  
 0.594
mrpl40
Mitochondrial ribosomal protein L40.
   
  
 0.505
c9h22orf39
Chromosome 9 C22orf39 homolog.
      
 0.489
bloc1s3
Biogenesis of lysosomal organelles complex 1 subunit 3.
      
 0.479
LOC114434675
14 kDa phosphohistidine phosphatase-like.
   
  
 0.474
phpt1
Phosphohistidine phosphatase 1.
   
  
 0.474
gnb1l
G protein subunit beta 1 like.
   
  
 0.441
mrpl28
Mitochondrial ribosomal protein L28.
   
    0.429
tango2
Transport and golgi organization 2 homolog.
      
 0.410
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.