edil3 protein (Parambassis ranga) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

edil3

EGF like repeats and discoidin domains 3. (457 aa)

Predicted Functional Partners:

pros1

0.865

fech

0.811

fxn

0.798

lman1

0.743

crim1

0.734

LOC114448813

0.732

slc40a1

0.732

atp7a

0.731

LOC114427606

0.731

mcfd2

0.718

Your Current Organism:

Parambassis ranga

NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114427606	edil3	ENSPRNP00000044457	ENSPRNP00000003164	Copper-transporting ATPase 2-like.	EGF like repeats and discoidin domains 3.	0.731
LOC114448813	edil3	ENSPRNP00000007103	ENSPRNP00000003164	Solute carrier family 40 member 1-like.	EGF like repeats and discoidin domains 3.	0.732
LOC114448813	slc40a1	ENSPRNP00000007103	ENSPRNP00000042204	Solute carrier family 40 member 1-like.	Solute carrier family 40 member 1.	0.838
atp7a	edil3	ENSPRNP00000014261	ENSPRNP00000003164	ATPase copper transporting alpha.	EGF like repeats and discoidin domains 3.	0.731
crim1	edil3	ENSPRNP00000010245	ENSPRNP00000003164	Cysteine rich transmembrane BMP regulator 1.	EGF like repeats and discoidin domains 3.	0.734
edil3	LOC114427606	ENSPRNP00000003164	ENSPRNP00000044457	EGF like repeats and discoidin domains 3.	Copper-transporting ATPase 2-like.	0.731
edil3	LOC114448813	ENSPRNP00000003164	ENSPRNP00000007103	EGF like repeats and discoidin domains 3.	Solute carrier family 40 member 1-like.	0.732
edil3	atp7a	ENSPRNP00000003164	ENSPRNP00000014261	EGF like repeats and discoidin domains 3.	ATPase copper transporting alpha.	0.731
edil3	crim1	ENSPRNP00000003164	ENSPRNP00000010245	EGF like repeats and discoidin domains 3.	Cysteine rich transmembrane BMP regulator 1.	0.734
edil3	fech	ENSPRNP00000003164	ENSPRNP00000009213	EGF like repeats and discoidin domains 3.	Ferrochelatase.	0.811
edil3	fxn	ENSPRNP00000003164	ENSPRNP00000034142	EGF like repeats and discoidin domains 3.	Frataxin.	0.798
edil3	lman1	ENSPRNP00000003164	ENSPRNP00000011432	EGF like repeats and discoidin domains 3.	Lectin, mannose binding 1.	0.743
edil3	mcfd2	ENSPRNP00000003164	ENSPRNP00000007574	EGF like repeats and discoidin domains 3.	Multiple coagulation factor deficiency 2.	0.718
edil3	pros1	ENSPRNP00000003164	ENSPRNP00000010480	EGF like repeats and discoidin domains 3.	Protein S.	0.865
edil3	slc40a1	ENSPRNP00000003164	ENSPRNP00000042204	EGF like repeats and discoidin domains 3.	Solute carrier family 40 member 1.	0.732
fech	edil3	ENSPRNP00000009213	ENSPRNP00000003164	Ferrochelatase.	EGF like repeats and discoidin domains 3.	0.811
fech	fxn	ENSPRNP00000009213	ENSPRNP00000034142	Ferrochelatase.	Frataxin.	0.978
fxn	edil3	ENSPRNP00000034142	ENSPRNP00000003164	Frataxin.	EGF like repeats and discoidin domains 3.	0.798
fxn	fech	ENSPRNP00000034142	ENSPRNP00000009213	Frataxin.	Ferrochelatase.	0.978
lman1	edil3	ENSPRNP00000011432	ENSPRNP00000003164	Lectin, mannose binding 1.	EGF like repeats and discoidin domains 3.	0.743