STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114439133Lysine-specific demethylase 5B-B-like. (1537 aa)    
Predicted Functional Partners:
atp5f1c
ATP synthase F1 subunit gamma.
  
 0.979
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 0.979
atp5f1d
ATP synthase F1 subunit delta.
  
 0.979
atp5f1a
ATP synthase F1 subunit alpha.
  
 0.954
LOC114442081
ATP synthase subunit alpha, mitochondrial-like.
  
 0.954
atp5pd
ATP synthase peripheral stalk subunit d.
   
 0.937
ENSPRNP00000006259
annotation not available
  
 0.933
ENSPRNP00000006266
annotation not available
  
 0.933
ENSPRNP00000006277
annotation not available
  
 0.933
atp5pb
ATP synthase peripheral stalk-membrane subunit b.
   
 0.932
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.