STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DTX1Deltex E3 ubiquitin ligase 1. (642 aa)    
Predicted Functional Partners:
LOC114443529
Neurogenic locus notch homolog protein 1-like.
    
 0.906
notch1
Notch receptor 1.
    
 0.906
LOC114434069
Neurogenic locus notch homolog protein 2-like.
    
 0.902
LOC114440526
Neurogenic locus notch homolog protein 2-like.
    
 0.889
dtx3
Deltex E3 ubiquitin ligase 3.
    
0.841
LOC114441414
E3 ubiquitin-protein ligase DTX3L-like.
    
0.800
ENSPRNP00000057265
annotation not available
     
0.779
LOC114435936
E3 ubiquitin-protein ligase Itchy-like.
    
 0.768
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.768
LOC114438022
E3 ubiquitin-protein ligase Itchy-like.
    
 0.768
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.