STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPRNP00000003312annotation not available (360 aa)    
Predicted Functional Partners:
LOC114439792
Voltage-dependent calcium channel gamma-1 subunit-like.
   
 
  0.577
cacng1
Calcium voltage-gated channel auxiliary subunit gamma 1.
   
 
  0.577
LOC114449784
Voltage-dependent calcium channel gamma-6 subunit-like.
   
 
  0.551
LOC114448832
Voltage-dependent calcium channel gamma-6 subunit-like.
   
 
  0.551
rnf130
Ring finger protein 130.
    
 
 0.511
SRL
Sarcalumenin-like.
   
 
  0.501
srl
Sarcalumenin.
   
 
  0.501
polr3b
RNA polymerase III subunit B.
    
 
 0.466
copz1
Coatomer protein complex subunit zeta 1.
      
 0.445
pmpcb
Peptidase, mitochondrial processing beta subunit.
   
 
 0.426
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.