STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zranb3Zinc finger RANBP2-type containing 3. (1041 aa)    
Predicted Functional Partners:
rpa3
Replication protein A3.
    
 0.977
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.960
pcna
Proliferating cell nuclear antigen.
   
 0.955
rpa1
Replication protein A1.
   
 0.926
RPA1
Replication protein A 70 kDa DNA-binding subunit-like.
   
 0.926
pola2
DNA polymerase alpha 2, accessory subunit.
   
 0.921
tonsl
Tonsoku like, DNA repair protein.
    
 0.902
xpa
XPA, DNA damage recognition and repair factor.
    
 0.894
pold1
DNA polymerase delta 1, catalytic subunit.
  
 0.891
pola1
DNA polymerase alpha 1, catalytic subunit.
  
 0.891
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.