STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114441548Apical junction component 1 homolog. (969 aa)    
Predicted Functional Partners:
LOC114435468
Calnexin-like.
    
 
 0.671
canx
Calnexin.
    
 
 0.671
preb
Prolactin regulatory element binding.
   
 
 0.612
sec63
SEC63 homolog, protein translocation regulator.
      
 0.599
cope
Coatomer protein complex subunit epsilon.
   
 
 0.594
erp44
Endoplasmic reticulum protein 44.
   
 
 0.587
tmed2
Transmembrane p24 trafficking protein 2.
   
 
 0.567
LOC114441932
Surfeit locus protein 4-like.
   
 
 0.546
LOC114443988
Surfeit locus protein 4.
   
 
 0.546
rpn1
Ribophorin I.
   
 
 0.499
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.