STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rccd1RCC1 domain containing 1. (382 aa)    
Predicted Functional Partners:
kdm8
Lysine demethylase 8.
    
 
 0.847
LOC114453748
ranBP2-like and GRIP domain-containing protein 3.
   
 0.727
zfand4
Zinc finger AN1-type containing 4.
    
 0.676
LOC114450611
Recombining binding protein suppressor of hairless-like protein.
   
 0.661
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
   
 0.661
LOC114433326
Recombining binding protein suppressor of hairless-like.
   
 0.661
herc3
HECT and RLD domain containing E3 ubiquitin protein ligase 3.
    
0.651
ENSPRNP00000051034
annotation not available
    
0.651
herc4
HECT and RLD domain containing E3 ubiquitin protein ligase 4.
    
0.651
dph3
Diphthamide biosynthesis 3.
    
 
 0.625
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.