STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114436052Rho GTPase-activating protein 39-like. (1142 aa)    
Predicted Functional Partners:
LOC114431351
HLA class II histocompatibility antigen, DP alpha 1 chain-like.
   
  0.692
capzb
Capping actin protein of muscle Z-line subunit beta.
    
 0.683
LOC114443585
Rho-related GTP-binding protein RhoF-like.
    
  0.681
rhbdl3
Rhomboid like 3.
    
  0.658
LOC114448013
RLA class II histocompatibility antigen, DP alpha-1 chain-like.
   
  0.656
LOC114448012
RLA class II histocompatibility antigen, DP alpha-1 chain-like.
   
  0.656
LOC114428094
Sentrin-specific protease 2-like.
    
  0.639
LOC114437872
Protein FAM169B-like.
    
 0.639
LOC114439171
Sentrin-specific protease 1-like.
    
  0.639
rps14
Ribosomal protein S14.
   
  0.630
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.