STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gapvd1GTPase activating protein and VPS9 domains 1. (1462 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
   
 0.938
rabep2
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.899
rab21
RAB21, member RAS oncogene family.
   
 0.874
rab5c
RAB5C, member RAS oncogene family.
    
 0.870
LOC114452577
Ras-related protein Rab-5C-like.
    
 0.870
LOC114426789
Ras-related protein Rab-5B-like.
    
 0.870
LOC114448191
Ras-related protein Rab-5A.
    
 0.870
RAB17
RAB17, member RAS oncogene family.
    
 0.870
LOC114426344
Ras-related protein Rab-5A.
    
 0.870
als2
Alsin Rho guanine nucleotide exchange factor ALS2.
   
 0.831
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.