STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp25Small nuclear ribonucleoprotein U11/U12 subunit 25. (185 aa)    
Predicted Functional Partners:
zmat5
Zinc finger matrin-type 5.
   
 
 0.968
phf5a
PHD finger protein 5A.
    
 0.962
zcrb1
Zinc finger CCHC-type and RNA binding motif containing 1.
     
 0.960
sf3b6
Splicing factor 3b subunit 6.
    
 0.958
snrnp48
Small nuclear ribonucleoprotein U11/U12 subunit 48.
     
 0.957
rnpc3
RNA binding region (RNP1, RRM) containing 3.
     
 0.951
sf3b5
Splicing factor 3b subunit 5.
   
 
 0.948
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.941
zrsr2
Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2.
     
 0.940
rbm41
RNA binding motif protein 41.
     
 0.937
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.