STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox4SRY-box transcription factor 4. (343 aa)    
Predicted Functional Partners:
tcf7
Transcription factor 7.
    
0.674
lef1
Lymphoid enhancer binding factor 1.
    
 0.671
ctnnb1
Catenin beta 1.
    
 0.666
LOC114433584
Junction plakoglobin-like.
    
 0.622
LOC114440235
Junction plakoglobin-like.
    
 0.622
LOC114453840
Catenin beta-1-like.
    
 0.622
LOC114443743
POU domain, class 5, transcription factor 1-like.
    
 0.597
gys1
Glycogen synthase 1.
    
 
 0.589
LOC114446839
Glycogen [starch] synthase, liver-like.
    
 
 0.589
LOC114432986
Transcription factor SOX-6-like.
    
0.577
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.