STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
isl1ISL LIM homeobox 1. (357 aa)    
Predicted Functional Partners:
lhx4
LIM homeobox 4.
   
0.868
LHX3
LIM homeobox 3.
   
0.868
LOC114447170
LIM domain-binding protein 1-A-like.
    
 0.808
LOC114434085
LIM domain-binding protein 1.
    
 0.808
ldb2
LIM domain binding 2.
    
 0.808
LOC114442208
Serum response factor-like.
    
 0.651
srf
Serum response factor.
    
 0.651
ascl1
Achaete-scute family bHLH transcription factor 1.
   
 0.615
LOC114431731
Homeobox protein engrailed-1-like.
   
 0.583
LOC114426358
Homeobox protein engrailed-1-B-like.
   
 0.583
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.