STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mre11MRE11 homolog, double strand break repair nuclease. (693 aa)    
Predicted Functional Partners:
rad50
RAD50 double strand break repair protein.
  
 0.999
nbn
Nibrin.
    
 0.999
ENSPRNP00000010757
BRCA1 associated RING domain 1.
   
 0.998
brca1
BRCA1 DNA repair associated.
   
 0.998
ENSPRNP00000054622
annotation not available
   
 0.995
lyrm4
LYR motif containing 4.
    
 0.994
exo1
Exonuclease 1.
  
 0.993
slf1
SMC5-SMC6 complex localization factor 1.
   
 0.993
blm
BLM RecQ like helicase.
  
 0.991
pigm
Phosphatidylinositol glycan anchor biosynthesis class M.
    
  0.990
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.