STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atox1Antioxidant 1 copper chaperone. (68 aa)    
Predicted Functional Partners:
ndufa5
NADH:ubiquinone oxidoreductase subunit A5.
   
 0.996
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.988
atp7a
ATPase copper transporting alpha.
    
 0.983
LOC114427606
Copper-transporting ATPase 2-like.
    
 0.983
mrps11
Mitochondrial ribosomal protein S11.
   
   0.899
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.881
tbpl1
TATA-box binding protein like 1.
    
 0.852
LOC114427749
TATA-box-binding protein-like.
    
 0.852
ENSPRNP00000036328
TATA box binding protein like 2.
    
 0.852
tbp
TATA-box binding protein.
    
 0.852
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.