STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hnrnpdHeterogeneous nuclear ribonucleoprotein D. (468 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.871
LOC114449931
Heterogeneous nuclear ribonucleoprotein C-like.
   
 0.841
LOC114440106
Serine/arginine-rich splicing factor 2-like.
  
 0.834
LOC114437157
Serine/arginine-rich splicing factor 2-like.
  
 0.832
LOC114434467
Heterogeneous nuclear ribonucleoprotein M-like.
   
 0.817
PABPN1L
PABPN1 like, cytoplasmic.
  
 0.790
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.786
LOC114443846
Heterogeneous nuclear ribonucleoprotein K-like.
   
 0.786
ENSPRNP00000056581
annotation not available
   
 0.784
srsf5
Serine and arginine rich splicing factor 5.
  
 0.781
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.