STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114441557Transmembrane protein 248-like. (278 aa)    
Predicted Functional Partners:
LOC114452465
Dual specificity mitogen-activated protein kinase kinase 6.
    
 0.687
MAP2K6
Dual specificity mitogen-activated protein kinase kinase 6-like.
    
 0.687
bub3
BUB3 mitotic checkpoint protein.
     
 0.484
mad2l1
Mitotic arrest deficient 2 like 1.
     
 0.472
BRK1
BRICK1 subunit of SCAR/WAVE actin nucleating complex.
   
 
  0.463
lamtor1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
   
 
  0.459
vamp3
Vesicle associated membrane protein 3.
     
 0.456
yap1
Yes associated protein 1.
    
 
 0.435
stbd1
Starch binding domain 1.
     
 0.407
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.