ENSPRNP00000004280 protein (Parambassis ranga)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPRNP00000004280

LSM family member 14B. (220 aa)

Predicted Functional Partners:

EIF4ENIF1

0.934

LOC114453265

0.911

LOC114448120

0.911

ddx6

0.911

ENSPRNP00000004279

0.819

cpeb1

0.819

dcp2

0.811

polr3f

0.771

crcp

0.771

polr3c

0.771

Your Current Organism:

Parambassis ranga

NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4ENIF1	ENSPRNP00000004279	ENSPRNP00000046253	ENSPRNP00000004279	Eukaryotic translation initiation factor 4E nuclear import factor 1.	annotation not available	0.934
EIF4ENIF1	ENSPRNP00000004280	ENSPRNP00000046253	ENSPRNP00000004280	Eukaryotic translation initiation factor 4E nuclear import factor 1.	LSM family member 14B.	0.934
EIF4ENIF1	LOC114448120	ENSPRNP00000046253	ENSPRNP00000022356	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Probable ATP-dependent RNA helicase ddx6.	0.983
EIF4ENIF1	LOC114453265	ENSPRNP00000046253	ENSPRNP00000017552	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Probable ATP-dependent RNA helicase ddx6.	0.983
EIF4ENIF1	cpeb1	ENSPRNP00000046253	ENSPRNP00000014128	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Cytoplasmic polyadenylation element binding protein 1.	0.856
EIF4ENIF1	ddx6	ENSPRNP00000046253	ENSPRNP00000025511	Eukaryotic translation initiation factor 4E nuclear import factor 1.	DEAD-box helicase 6.	0.983
EIF4ENIF1	polr3c	ENSPRNP00000046253	ENSPRNP00000056482	Eukaryotic translation initiation factor 4E nuclear import factor 1.	RNA polymerase III subunit C.	0.412
ENSPRNP00000004279	EIF4ENIF1	ENSPRNP00000004279	ENSPRNP00000046253	annotation not available	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.934
ENSPRNP00000004279	ENSPRNP00000004280	ENSPRNP00000004279	ENSPRNP00000004280	annotation not available	LSM family member 14B.	0.819
ENSPRNP00000004279	LOC114448120	ENSPRNP00000004279	ENSPRNP00000022356	annotation not available	Probable ATP-dependent RNA helicase ddx6.	0.911
ENSPRNP00000004279	LOC114453265	ENSPRNP00000004279	ENSPRNP00000017552	annotation not available	Probable ATP-dependent RNA helicase ddx6.	0.911
ENSPRNP00000004279	cpeb1	ENSPRNP00000004279	ENSPRNP00000014128	annotation not available	Cytoplasmic polyadenylation element binding protein 1.	0.819
ENSPRNP00000004279	crcp	ENSPRNP00000004279	ENSPRNP00000016090	annotation not available	CGRP receptor component.	0.771
ENSPRNP00000004279	dcp2	ENSPRNP00000004279	ENSPRNP00000029697	annotation not available	Decapping mRNA 2.	0.811
ENSPRNP00000004279	ddx6	ENSPRNP00000004279	ENSPRNP00000025511	annotation not available	DEAD-box helicase 6.	0.911
ENSPRNP00000004279	polr3c	ENSPRNP00000004279	ENSPRNP00000056482	annotation not available	RNA polymerase III subunit C.	0.771
ENSPRNP00000004279	polr3f	ENSPRNP00000004279	ENSPRNP00000000284	annotation not available	RNA polymerase III subunit F.	0.771
ENSPRNP00000004280	EIF4ENIF1	ENSPRNP00000004280	ENSPRNP00000046253	LSM family member 14B.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.934
ENSPRNP00000004280	ENSPRNP00000004279	ENSPRNP00000004280	ENSPRNP00000004279	LSM family member 14B.	annotation not available	0.819
ENSPRNP00000004280	LOC114448120	ENSPRNP00000004280	ENSPRNP00000022356	LSM family member 14B.	Probable ATP-dependent RNA helicase ddx6.	0.911