STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbdc1Polysaccharide biosynthesis domain containing 1. (166 aa)    
Predicted Functional Partners:
ttll12
Tubulin tyrosine ligase like 12.
    
   0.761
pdcd5
Programmed cell death 5.
   
    0.722
mysm1
Myb like, SWIRM and MPN domains 1.
   
 
 0.674
LOC114445619
Elongation factor 1-alpha.
    
   0.594
LOC114452815
Elongation factor 1-alpha-like.
    
   0.594
EEF1A1
Elongation factor 1-alpha 1.
    
   0.594
EEF1A1-2
Elongation factor 1-alpha 1-like.
    
   0.594
LOC114440188
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like.
    
   0.578
gspt1
G1 to S phase transition 1.
    
   0.578
ENSPRNP00000043492
annotation not available
    
   0.578
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.