STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf113aRing finger protein 113A. (325 aa)    
Predicted Functional Partners:
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.999
sf3b2
Splicing factor 3b subunit 2.
    
 0.998
sf3a1
Splicing factor 3a subunit 1.
    
 0.997
cwc27
CWC27 spliceosome associated cyclophilin.
   
 0.997
sf3a2
Splicing factor 3a subunit 2.
    
 0.997
cwc22
CWC22 spliceosome associated protein homolog.
    
 0.997
bud13
BUD13 homolog.
    
 0.997
sf3b1
Splicing factor 3b subunit 1.
    
 0.997
dhx16
DEAH-box helicase 16.
    
 0.997
rbmx2
RNA binding motif protein X-linked 2.
   
 0.996
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.