STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf168Ring finger protein 168. (440 aa)    
Predicted Functional Partners:
tp53bp1
Tumor protein p53 binding protein 1.
    
 0.982
rps27a
Ribosomal protein S27a.
   
  0.972
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.959
ube2n
Ubiquitin conjugating enzyme E2 N.
    
 0.940
LOC114430264
Ubiquitin-conjugating enzyme E2 N-like.
    
 0.940
brca1
BRCA1 DNA repair associated.
    
0.889
mdc1
Mediator of DNA damage checkpoint 1.
   
 0.866
lig4
DNA ligase 4.
     
 0.860
pias4
Protein inhibitor of activated STAT 4.
     
 0.859
ENSPRNP00000010757
BRCA1 associated RING domain 1.
    
 0.851
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.