STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPRNP00000004556Spermatogenesis associated 22. (248 aa)    
Predicted Functional Partners:
meiob
Meiosis specific with OB-fold.
      
 0.585
ENSPRNP00000004394
DnaJ (Hsp40) homolog, subfamily C, member 30b.
      
 0.533
syce3
Synaptonemal complex central element protein 3.
      
 0.524
spata20
Spermatogenesis associated 20.
      
 0.509
cdx4
Caudal type homeobox 4.
      
 0.491
lrrc42
Leucine rich repeat containing 42.
      
 0.483
hfm1
Helicase for meiosis 1.
      
 0.457
spata17
Spermatogenesis associated 17.
      
 0.454
spo11
SPO11 initiator of meiotic double stranded breaks.
      
 0.449
spata4
Spermatogenesis associated 4.
      
 0.441
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.