STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lman2Lectin, mannose binding 2. (372 aa)    
Predicted Functional Partners:
tmed2
Transmembrane p24 trafficking protein 2.
   
 0.782
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.777
LOC114434907
Protein transport protein Sec23A.
   
 0.724
LOC114427344
Protein transport protein Sec23A.
   
 0.724
LOC114427884
Protein transport protein Sec23A.
   
 0.724
lman1
Lectin, mannose binding 1.
    
0.723
bet1
Bet1 golgi vesicular membrane trafficking protein.
   
 
 0.704
LOC114436834
Circularly permutated Ras protein 1-like.
   
 0.702
LOC114437418
Circularly permutated Ras protein 1-like.
   
 0.702
gosr2
Golgi SNAP receptor complex member 2.
   
 
 0.700
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.