STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
depdc7DEP domain containing 7. (542 aa)    
Predicted Functional Partners:
LOC114453098
Very-long-chain enoyl-CoA reductase-like.
     
 0.586
LOC114440558
Very-long-chain enoyl-CoA reductase-like.
     
 0.586
tecr
trans-2,3-enoyl-CoA reductase.
     
 0.586
LOC114436004
Prostacyclin synthase-like.
   
 
  0.559
FAM92B
Family with sequence similarity 92 member B.
   
    0.537
LOC114445878
Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2-like.
   
  0.507
LOC114447342
annotation not available
   
  0.507
cdc14a
Cell division cycle 14A.
    
  0.490
cdkn3
Cyclin dependent kinase inhibitor 3.
    
  0.490
dusp23
Dual specificity phosphatase 23.
    
  0.490
Your Current Organism:
Parambassis ranga
NCBI taxonomy Id: 210632
Other names: Ambassis ranga, Chanda ranga, Indian glassy fish, P. ranga, Pseudambassis ranga
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.